PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002862
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 309aa    MW: 34875 Da    PI: 6.8014
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-2049PU_refplantGDBView CDS
gnl|UG|Psi#S41653895PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.56.5e-56731761101
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw+ q   ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+filelt+rsw+haeenkrrtl+k+diaaa+trtdifdflvdivp
  Psi002862  73 QLQMFWAFQmqeIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTMRSWIHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 172
                89****98866789************************************************************************************** PP

      NF-YC  98 rdel 101
                rd+l
  Psi002862 173 RDDL 176
                **87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.0E-3652167IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.5E-3887159IPR009072Histone-fold
PfamPF008084.6E-2195158IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDHHNHHQHH PSSSSGGAAP QGMSQGYPDG EAAPPTPVGM QGQAGQQQPQ PGLHQSGAQQ  60
AFHHHHMQQQ HQQLQMFWAF QMQEIEQVSD FKNHQLPLAR IKKIMKADED VRMISAEAPV  120
LFAKACEMFI LELTMRSWIH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDDLKEEG  180
LGLGFARGGV TPEGSFYYPP PSMPQSPHQQ GMMGPSSIMM GRPAPLQMDP SAMYMQQQQP  240
PRPYGMPPHP HQPMWQHPHH PHPHQQQMPD GQSYGHPHQQ QQHLPDGQSY GQHQMTDEHS  300
YGTPPRSAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B3e-4381173397NF-YC
4csr_B3e-4382173194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C3e-4382173194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4g92_C3e-437417319119HapE
4g91_C3e-437417319119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.55670.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582162.14e-78PREDICTED: nuclear transcription factor Y subunit C-1
SwissprotQ9SMP05e-76NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA9NKD30.0A9NKD3_PICSI; Putative uncharacterized protein
STRINGSolyc06g072040.1.12e-76(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.17e-63nuclear factor Y, subunit C1